Search: "model"

Translates Mermaid sequenceDiagrams describing cryptographic protocols into ProVerif formal verification models (.pv files). Use when generating a ProVerif model, formally verifying a protocol, converting a Mermaid diagram to ProVerif, verifying protocol security properties (secrecy, authentication, forward secrecy), checking for replay attacks, or producing a .pv file from a sequence diagram.

Selects bounded, graph-informed source slices with Trailmark and delegates focused code analysis or patch-proposal work to a smaller subagent. Use when offloading function-, class-, caller-, callee-, call-path-, entrypoint-, or line-focused code tasks to constrained or locally hosted models without exposing the full repository.

Extracts protocol message flow from source code, RFCs, academic papers, pseudocode, informal prose, ProVerif (.pv), or Tamarin (.spthy) models and generates Mermaid sequenceDiagrams with cryptographic annotations. Use when diagramming a crypto protocol, visualizing a handshake or key exchange flow, extracting message flow from a spec or RFC, diagramming a ProVerif or Tamarin model, or drawing sequence diagrams for TLS, Noise, Signal, X3DH, Double Ratchet, FROST, DH, or ECDH protocols.

Understand a codebase before looking for bugs in it - what each function assumes, what it guarantees, and what it depends on elsewhere. Use when starting an audit, threat model, or architecture review on unfamiliar code, and before any vulnerability-hunting pass.

This skill provides an advanced financial modeling suite with DCF analysis, sensitivity testing, Monte Carlo simulations, and scenario planning for investment decisions

Uses the Biohub esm Python SDK for ESM3 protein generation, ESMC embeddings, and ESMFold2 all-atom folding. Applies to local model inference and Biohub hosted clients, including former Forge workflows; distinguishes the separate legacy fair-esm distribution.

Google quantum computing framework. Use when targeting Google Quantum AI hardware, designing noise-aware circuits, or running quantum characterization experiments. Best for Google hardware, noise modeling, and low-level circuit design. For IBM hardware use qiskit; for quantum ML with autodiff use pennylane; for physics simulations use qutip.

Builds and checks Bayesian models with PyMC, including hierarchical models, NUTS MCMC, variational inference, mutable-data predictions, posterior predictive checks, diagnostics, and PSIS-LOO model comparison. Use for probabilistic modeling and uncertainty inference in PyMC.

Applies Arbor Hypothesis Tree Refinement to research artifacts with repeatable evaluators, including model training, agent harnesses, data synthesis and benchmark optimization. Uses persistent hypotheses, isolated experiments, evidence propagation and held-out candidate comparison for multi-experiment research runs. Includes a standard-library state manager and guidance for the RUC-NLPIR Arbor CLI.

Supports Gtars for local genomic interval models and set algebra, overlaps and counts, consensus and coverage, tokenization, fragment processing, and refget/BEDbase planning across Python, Rust, and the CLI.

Modal is a serverless cloud platform for running Python on demand, including on-demand GPUs. Use when deploying or serving AI/ML models, running GPU-accelerated workloads (training, fine-tuning, inference), serving web endpoints, scheduling batch jobs, or scaling Python code to cloud containers with the Modal SDK.

Simulate and audit closed and open quantum-system models with QuTiP 5, including deterministic, trajectory, steady-state, spectral, and phase-space workflows. Use for local quantum-dynamics work where physical assumptions, dimensions, and numerical convergence must be explicit.