Search: "python"

Queries 20+ bioinformatics resources through CLI/Python. Supports quick lookups of gene info, BLAST/BLAT, viral sequence downloads, PDB/mmCIF structures, G2P residue annotations, enrichment analysis, OpenTargets, COSMIC, CELLxGENE, and 8cube mouse specificity/expression data. Best for interactive exploration and simple queries. For batch processing or advanced BLAST use biopython; for multi-database Python workflows use bioservices.

Provides Biopython workflows for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entrez). Supports batch processing, custom molecular-biology pipelines, BLAST automation, structure analysis, and motif analysis.

Stores and queries chunked N-D scientific arrays with Zarr-Python 3, including codecs, sharding, S3/GCS storage, and NumPy/Dask/Xarray integration. Use for array layout, bounded I/O, format migration, or scientific metadata preservation.

Configures Python projects with modern tooling (uv, ruff, ty). Use when creating projects, writing standalone scripts, or migrating from pip/Poetry/mypy/black.

- 🔭 I'm a backend developer - 🌱 I like to learn new knowledge, especially python and linux - 👯 Coding is my live - 🥅 Hope to contribute to society through coding - ⚡ What I write is not a code, but a dream - 📺 I make development and tech tutorials on YouTube - 🔭 My CV - https://www.cakeresu...

Universal shared memory for AI agents — one brain for all your agents, 100% local & private. Works with Hermes, OpenClaw, Claude Code, Cursor. (Not the PyPI 'nexus-memory' package)