Search: "scoped"

Searches and reads biomedical papers, FDA/PMDA/EMA documents, clinical trials, and protein records with the GXL Paperclip CLI and Python SDK. Supports source-scoped search, full-text grep, metadata SQL, map/reduce extraction, figure analysis, optional repositories and claim verification, and line-pinned citations. Use when a task names GXL paperclip, asks to install or authenticate it, or requests literature retrieval and evidence extraction through Paperclip.

Inspects and automates microscopy data workflows against OMERO.server with omero-py, BlitzGateway, OMERO CLI, tables, annotations, ROIs, rendering, and documented OMERO.web APIs. Use this skill for scoped OMERO inventory, metadata export, import/export planning, or reviewed write workflows.

Runs an autonomous review-and-fix improvement loop over the current branch's changes until a PR review comes back clean, scoped mechanically to the directories the branch touched. Reviews are performed by an installed PR-review skill (default: pr-review-toolkit's review-pr). Use to fix review findings on a branch before opening or updating a pull request ('clean up this branch', 'fix this PR until review passes', 'run review-and-fix on my changes'). NOT for a one-time review — run the PR-review skill directly.

Design Tandem mission blueprints with scoped workstreams, explicit handoffs, review gates, and prompts that compile into reliable staged missions.

Design Tandem mission blueprints with scoped workstreams, explicit handoffs, review gates, and prompts that compile into reliable staged missions.