Search: "toolkit"

Runs an autonomous review-and-fix improvement loop over the current branch's changes until a PR review comes back clean, scoped mechanically to the directories the branch touched. Reviews are performed by an installed PR-review skill (default: pr-review-toolkit's review-pr). Use to fix review findings on a branch before opening or updating a pull request ('clean up this branch', 'fix this PR until review passes', 'run review-and-fix on my changes'). NOT for a one-time review — run the PR-review skill directly.

Comprehensive PDF manipulation toolkit for extracting text and tables, creating new PDFs, merging/splitting documents, and handling forms. When Claude needs to fill in a PDF form or programmatically process, generate, or analyze PDF documents at scale.

Cheminformatics toolkit for fine-grained molecular control. SMILES/SDF parsing, descriptors (MW, LogP, TPSA), fingerprints, substructure search, 2D/3D generation, similarity, reactions. For standard workflows with simpler interface, use datamol (wrapper around RDKit). Use rdkit for advanced control, custom sanitization, specialized algorithms.

NGS analysis toolkit. BAM to bigWig conversion, QC (correlation, PCA, fingerprints), heatmaps/profiles (TSS, peaks), for ChIP-seq, RNA-seq, ATAC-seq visualization.

Analyzes, manipulates, compares, annotates, and visualizes phylogenetic or other hierarchical trees with ETE 4. Supports Newick/Nexus tree I/O, topology edits and pattern matching, Robinson-Foulds comparisons, gene-tree evolutionary events and reconciliation, NCBI/GTDB taxonomy, SmartView exploration, and publication rendering. Applies to existing trees after alignment and phylogenetic inference, rather than inferring trees from raw sequences.

Biological data toolkit. Sequence analysis, alignments, phylogenetic trees, diversity metrics (alpha/beta, UniFrac), ordination (PCoA), PERMANOVA, FASTA/Newick I/O, for microbiome analysis.

Local multilingual voice toolkit — speech-to-text (STT), text-to-speech (TTS), speaker diarization, and language detection, over a CLI or an MCP server. Runs entirely offline on Apple Silicon, Linux, and Windows. No API keys, no cloud. NVIDIA Parakeet TDT for STT across 25 European languages, Kokoro-82M + Vosk-TTS for TTS in 9 languages, plus macOS AVSpeechSynthesizer for ~180 system voices with zero install.

Composio powers 1000+ toolkits, tool search, context management, authentication, and a sandboxed workbench to help you build AI agents that turn intent into action.

A universal CLI toolkit for serious AI-assisted development. Works across Cursor, Claude Code, Antigravity, Codex, and more.

A unified evaluation toolkit and leaderboard for rigorously assessing the scientific intelligence of large language and vision–language models across the full research workflow.

Flux Cloud/FluxOS AI toolkit: Claude & Codex skills plus a Flux-tuned MCP server for safe, deterministic node/app API workflows (v8 specs, signing, lifecycle, logs/files, endpoint discovery)